Denis V. Kaznadzey

Computational Biology and Bioinformatics

Address: 2009 Norris Rd, Walnut Creek, CA 94596 USA
email: denis@scidm.com
tel: (847) 340-5445

Interests:
- Systems Biology; Functional "Omics"; Genome Evolution;
- Interpretation of high-throughput experimental data in biology
- Algorithmics and Algorithm Optimization
- High Performance Data Management
- Data Mining techniques;
- Text Mining and Applications of Discursive Linguistics
- AI agentic systems for Research and Development

Select Technical Accomplishments:

QSimScan - high throughput similarity search technology and tools. Open source project.
scidm-claude - Agentic Framework for general R&D assistance
EST analysis pipeline - capable of assembling and mapping entire human dbEST on conventional hardware.
SciDM (Scientific Data Manager) - high performance data management solution, featuring platform and language neutrality, domain-specific object-relational data model, zero configuration, over-the-network accessibility. Designed for applications that need data throughput three orders of magnitude over conventional DBMSs and BigData solutions.
Robotic Control Software for LabNext microarray printing robots.
ImaGene- the world's first hardware accelerated system for DNA and protein sequence analysis - project of an early age of bioinformatics (1991-1993) I am still proud of.